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Science 9 February 1996: Vol. 271. no. 5250, pp. 792 - 794 DOI: 10.1126/science.271.5250.792
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Reports
DNA: An Extensible Molecule
Philippe Cluzel,
Anne Lebrun,
Christoph Heller (1),
Richard Lavery,
Jean-Louis Viovy,
Didier Chatenay (2),
François Caron (3)
The force-displacement response of a single duplex DNA molecule was
measured. The force saturates at a plateau around 70 piconewtons, which
ends when the DNA has been stretched about 1.7 times its contour
length. This behavior reveals a highly cooperative transition to a
state here termed S-DNA. Addition of an intercalator suppresses this
transition. Molecular modeling of the process also yields a force
plateau and suggests a structure for the extended form. These results
may shed light on biological processes involving DNA extension and open
the route for mechanical studies on individual molecules in a
previously unexplored range.
P. Cluzel, C. Heller, J.-L. Viovy, Institut Curie [URA Centre
National de la Recherche Scientifique (CNRS) 448 and 1379], 11-13 Rue
Pierre et Marie Curie, Paris 75005, France.
A. Lebrun and R. Lavery, Laboratoire de Biochimie Théorique
(URA77 CNRS), Institut de Biologie Physico-Chimique, 13 Rue Pierre et
Marie Curie, Paris 75005, France.
D. Chatenay, LUDFC, Institut de Physique, 3 Rue de l'Université,
Strasbourg 67084, France.
F. Caron, Ecole Normale Superieure, Laboratoire de
Génétique Moléculaire (URA CNRS 1302), 46 Rue d'Ulm,
Paris 75230, France.
(1) Permanent address: Max-Planck-Institut für
Molekulare Genetik, Ihnestraße 73, D-14195 Berlin-Dahlem, Germany.
(2) Present address: Rockefeller University, Box 265, 1230 York
Avenue, New York, NY 10021, USA.
(3) To whom correspondence should be addressed.
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- From the Cover: Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging.
- J. van Mameren, P. Gross, G. Farge, P. Hooijman, M. Modesti, M. Falkenberg, G. J. L. Wuite, and E. J. G. Peterman (2009)
PNAS
106, 18231-18236
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- Peeling back the mystery of DNA overstretching.
- M. C. Williams, I. Rouzina, and M. J. McCauley (2009)
PNAS
106, 18047-18048
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- Conformational analysis of nucleic acids revisited: Curves+.
- R. Lavery, M. Moakher, J. H. Maddocks, D. Petkeviciute, and K. Zakrzewska (2009)
Nucleic Acids Res.
37, 5917-5929
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- The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.
- C. Danilowicz, C. Limouse, K. Hatch, A. Conover, V. W. Coljee, N. Kleckner, and M. Prentiss (2009)
PNAS
106, 13196-13201
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- Single-molecule biophysics: at the interface of biology, physics and chemistry.
- A. A Deniz, S. Mukhopadhyay, and E. A Lemke (2008)
J R Soc Interface
5, 15-45
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- Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping.
- N. Crampton, M. Yokokawa, D. T. F. Dryden, J. M. Edwardson, D. N. Rao, K. Takeyasu, S. H. Yoshimura, and R. M. Henderson (2007)
PNAS
104, 12755-12760
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- Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules.
- J. H. Kim and R. G. Larson (2007)
Nucleic Acids Res.
35, 3848-3858
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- Nonlinear mechanics of soft fibrous networks.
- A Kabla and L Mahadevan (2007)
J R Soc Interface
4, 99-106
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- On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension.
- J. Wereszczynski and I. Andricioaei (2006)
PNAS
103, 16200-16205
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- DNA mechanics as a tool to probe helicase and translocase activity.
- T. Lionnet, A. Dawid, S. Bigot, F.-X. Barre, O. A. Saleh, F. Heslot, J.-F. Allemand, D. Bensimon, and V. Croquette (2006)
Nucleic Acids Res.
34, 4232-4244
| Abstract »
| Full Text »
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- Structure and energy of a DNA dodecamer under tensile load.
- S. Piana (2005)
Nucleic Acids Res.
33, 7029-7038
| Abstract »
| Full Text »
| PDF »
- The relative flexibility of B-DNA and A-RNA duplexes: database analysis.
- A. Perez, A. Noy, F. Lankas, F. J. Luque, and M. Orozco (2004)
Nucleic Acids Res.
32, 6144-6151
| Abstract »
| Full Text »
| PDF »
- Single-particle tracking for DNA tether length monitoring.
- N. Pouget, C. Dennis, C. Turlan, M. Grigoriev, M. Chandler, and L. Salome (2004)
Nucleic Acids Res.
32, e73
| Abstract »
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| PDF »
- Forces generated during actin-based propulsion: A direct measurement by micromanipulation.
- Y. Marcy, J. Prost, M.-F. Carlier, and C. Sykes (2004)
PNAS
101, 5992-5997
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- Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases.
- M. D. Stone, Z. Bryant, N. J. Crisona, S. B. Smith, A. Vologodskii, C. Bustamante, and N. R. Cozzarelli (2003)
PNAS
100, 8654-8659
| Abstract »
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| PDF »
- Single-molecule detection of DNA hybridization.
- M. Singh-Zocchi, S. Dixit, V. Ivanov, and G. Zocchi (2003)
PNAS
100, 7605-7610
| Abstract »
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- Forcing Chromatin.
- J. Zlatanova (2003)
J. Biol. Chem.
278, 23213-23216
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- A two-state kinetic model for the unfolding of single molecules by mechanical force.
- F. Ritort, C. Bustamante, and I. Tinoco Jr. (2002)
PNAS
99, 13544-13548
| Abstract »
| Full Text »
| PDF »
- Analysis of RNA flexibility by scanning force spectroscopy.
- M. Bonin, R. Zhu, Y. Klaue, J. Oberstrass, E. Oesterschulze, and W. Nellen (2002)
Nucleic Acids Res.
30, e81
| Abstract »
| Full Text »
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- Observation by fluorescence microscopy of transcription on single combed DNA.
- Z. Gueroui, C. Place, E. Freyssingeas, and B. Berge (2002)
PNAS
99, 6005-6010
| Abstract »
| Full Text »
| PDF »
- DNA exhibits multi-stranded binding recognition on glass microarrays.
- S. J. Shi, A. Scheffer, E. Bjeldanes, M. A. Reynolds, and L. J. Arnold (2001)
Nucleic Acids Res.
29, 4251-4256
| Abstract »
| Full Text »
| PDF »
- Dicentric Chromosome Stretching during Anaphase Reveals Roles of Sir2/Ku in Chromatin Compaction in Budding Yeast.
- D. A. Thrower and K. Bloom (2001)
Mol. Biol. Cell
12, 2800-2812
| Abstract »
| Full Text »
| PDF »
- Kinetics and mechanism of DNA uptake into the cell nucleus.
- H. Salman, D. Zbaida, Y. Rabin, D. Chatenay, and M. Elbaum (2001)
PNAS
| Abstract »
| Full Text »
| PDF »
- Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.
- M. C. Williams, I. Rouzina, J. R. Wenner, R. J. Gorelick, K. Musier-Forsyth, and V. A. Bloomfield (2001)
PNAS
| Abstract »
| Full Text »
- Modeling multi-component protein-DNA complexes: the role of bending and dimerization in the complex of p53 dimers with DNA.
- A. Lebrun, R. Lavery, and H. Weinstein (2001)
Protein Eng. Des. Sel.
14, 233-243
| Abstract »
| Full Text »
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- Replication by a single DNA polymerase of a stretched single-stranded DNA.
- B. Maier, D. Bensimon, and V. Croquette (2000)
PNAS
97, 12002-12007
| Abstract »
| Full Text »
| PDF »
- Recombinational Repair of DNA Damage in Escherichia coli and Bacteriophage lambda.
- A. Kuzminov (1999)
Microbiol. Mol. Biol. Rev.
63, 751-813
| Abstract »
| Full Text »
| PDF »
- Dynamic force spectroscopy of single DNA molecules.
- T. Strunz, K. Oroszlan, R. Schafer, and H.-J. Guntherodt (1999)
PNAS
96, 11277-11282
| Abstract »
| Full Text »
| PDF »
- Biomechanics, One Molecule at a Time.
- A. D. Mehta, M. Rief, and J. A. Spudich (1999)
J. Biol. Chem.
274, 14517-14520
| Full Text »
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- The rise of single-molecule DNA biochemistry.
- A. Rich (1998)
PNAS
95, 13999-14000
| Full Text »
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- Stretched and overwound DNA forms a Pauling-like structure with exposed bases.
- J. F. Allemand, D. Bensimon, R. Lavery, and V. Croquette (1998)
PNAS
95, 14152-14157
| Abstract »
| Full Text »
| PDF »
- RecA binding to a single double-stranded DNA molecule: A possible role of DNA conformational fluctuations.
- J. F. Leger, J. Robert, L. Bourdieu, D. Chatenay, and J. F. Marko (1998)
PNAS
95, 12295-12299
| Abstract »
| Full Text »
| PDF »
- Torsional directed walks, entropic elasticity, and DNA twist stiffness.
- J. D. Moroz and P. Nelson (1997)
PNAS
94, 14418-14422
| Abstract »
| Full Text »
| PDF »
- Polymer Models of Meiotic and Mitotic Chromosomes.
- J. F. Marko and E. D. Siggia (1997)
Mol. Biol. Cell
8, 2217-2231
| Abstract »
| Full Text »
- Twist and shout (and pull): Molecular chiropractors undo DNA.
- J. F. Marko (1997)
PNAS
94, 11770-11772
| Full Text »
| PDF »
- Mechanical separation of the complementary strands of DNA.
- B. Essevaz-Roulet, U. Bockelmann, and F. Heslot (1997)
PNAS
94, 11935-11940
| Abstract »
| Full Text »
| PDF »
- Helical repeat of DNA in the region of homologous pairing.
- K. Kiianitsa and A. Stasiak (1997)
PNAS
94, 7837-7840
| Abstract »
| Full Text »
| PDF »
- An extended DNA structure through deoxyribose-base stacking induced by RecA protein.
- T. Nishinaka, Y. Ito, S. Yokoyama, and T. Shibata (1997)
PNAS
94, 6623-6628
| Abstract »
| Full Text »
| PDF »
- Ionic effects on the elasticity of single DNA molecules.
- C. G. Baumann, S. B. Smith, V. A. Bloomfield, and C. Bustamante (1997)
PNAS
94, 6185-6190
| Abstract »
| Full Text »
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- Local DNA stretching mimics the distortion caused by the TATA box-binding protein.
- A. Lebrun, Z. Shakked, and R. Lavery (1997)
PNAS
94, 2993-2998
| Abstract »
| Full Text »
| PDF »
- Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.
- M. C. Williams, I. Rouzina, J. R. Wenner, R. J. Gorelick, K. Musier-Forsyth, and V. A. Bloomfield (2001)
PNAS
98, 6121-6126
| Abstract »
| Full Text »
| PDF »
- Kinetics and mechanism of DNA uptake into the cell nucleus.
- H. Salman, D. Zbaida, Y. Rabin, D. Chatenay, and M. Elbaum (2001)
PNAS
98, 7247-7252
| Abstract »
| Full Text »
| PDF »
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