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Science 14 December 2001: Vol. 294. no. 5550, pp. 2348 - 2351 DOI: 10.1126/science.1067179
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Reports
Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
William J. Murphy,1*
Eduardo Eizirik,12*
Stephen J. O'Brien,1
Ole Madsen,3
Mark Scally,45
Christophe J. Douady,45
Emma Teeling,45
Oliver A. Ryder,6
Michael J. Stanhope,57
Wilfried W. de Jong,38
Mark S. Springer4
Molecular phylogenetic studies have resolved placental
mammals into four major groups, but have not established the full
hierarchy of interordinal relationships, including the position of the
root. The latter is critical for understanding the early biogeographic history of placentals. We investigated placental phylogeny using Bayesian and maximum-likelihood methods and a 16.4-kilobase molecular data set. Interordinal relationships are almost entirely resolved. The
basal split is between Afrotheria and other placentals, at about 103 million years, and may be accounted for by the separation of South
America and Africa in the Cretaceous. Crown-group Eutheria may have
their most recent common ancestry in the Southern Hemisphere (Gondwana).
1 Laboratory of Genomic Diversity, National
Cancer Institute, Frederick, MD 21702, USA.
2 Department of Biology, University of Maryland,
College Park, MD 20742, USA.
3 Department of
Biochemistry, University of Nijmegen, Netherlands.
4 Department of Biology, University of California,
Riverside, California 92521, USA.
5 Queen's
University of Belfast, Biology and Biochemistry, Belfast, UK.
6 Center for Reproduction of Endangered Species,
Zoological Society of San Diego, San Diego, CA 92112, USA.
7 Bioinformatics, GlaxoSmithKline, Collegeville, PA
19426, USA.
8 Institute for Systematics and
Population Biology, Amsterdam, Netherlands.
*
These authors contributed equally to this work.
To whom correspondence should be addressed. E-mail:
mark.springer{at}ucr.edu (M.S.S.) or obrien{at}ncifcrf.gov (S.J.O.)
Read the Full Text
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| PDF »
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80, 5663-5669
| Abstract »
| Full Text »
| PDF »
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- C. Poux, P. Chevret, D. Huchon, W. W. de Jong, and E. J. P. Douzery (2006)
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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- J. Padberg, E. Disbrow, and L. Krubitzer (2005)
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| Abstract »
| Full Text »
| PDF »
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| Abstract »
| Full Text »
| PDF »
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309, 2202-2204
| Abstract »
| Full Text »
| PDF »
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- W. Wang, H. Zheng, S. Yang, H. Yu, J. Li, H. Jiang, J. Su, L. Yang, J. Zhang, J. McDermott, et al. (2005)
Genome Res.
15, 1258-1264
| Abstract »
| Full Text »
| PDF »
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- H. Nishihara, Y. Satta, M. Nikaido, J. G. M. Thewissen, M. J. Stanhope, and N. Okada (2005)
Mol. Biol. Evol.
22, 1823-1833
| Abstract »
| Full Text »
| PDF »
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Mol. Biol. Evol.
22, 1869-1886
| Abstract »
| Full Text »
| PDF »
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- O. R. P. Bininda-Emonds, R. M. D. Beck, and A. Purvis (2005)
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| Full Text »
| PDF »
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- W. J. Murphy, D. M. Larkin, A. E.-v. der Wind, G. Bourque, G. Tesler, L. Auvil, J. E. Beever, B. P. Chowdhary, F. Galibert, L. Gatzke, et al. (2005)
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309, 613-617
| Abstract »
| Full Text »
| PDF »
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- A. Bashir, C. Ye, A. L. Price, and V. Bafna (2005)
Genome Res.
15, 998-1006
| Abstract »
| Full Text »
| PDF »
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- D. J. Lynn, A. R. Freeman, C. Murray, and D. G. Bradley (2005)
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170, 1189-1196
| Abstract »
| Full Text »
| PDF »
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- C. Springfeld, G. Darai, and R. Cattaneo (2005)
J. Virol.
79, 6781-6790
| Abstract »
| Full Text »
| PDF »
- Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny.
- Z. Yang and B. Rannala (2005)
Syst Biol
54, 455-470
| Abstract »
| Full Text »
| PDF »
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- D. M. Hillis, T. A. Heath, and K. St. John (2005)
Syst Biol
54, 471-482
| Abstract »
| Full Text »
| PDF »
- Rapid electrostatic evolution at the binding site for cytochrome c on cytochrome c oxidase in anthropoid primates.
- T. R. Schmidt, D. E. Wildman, M. Uddin, J. C. Opazo, M. Goodman, and L. I. Grossman (2005)
PNAS
102, 6379-6384
| Abstract »
| Full Text »
| PDF »
- Problems of allometric scaling analysis: examples from mammalian reproductive biology.
- R. D. Martin, M. Genoud, and C. K. Hemelrijk (2005)
J. Exp. Biol.
208, 1731-1747
| Abstract »
| Full Text »
| PDF »
- A Late Jurassic Digging Mammal and Early Mammalian Diversification.
- Z.-X. Luo and J. R. Wible (2005)
Science
308, 103-107
| Abstract »
| Full Text »
| PDF »
- Molecular Phylogeny of the Carnivora (Mammalia): Assessing the Impact of Increased Sampling on Resolving Enigmatic Relationships.
- J. J. Flynn, J. A. Finarelli, S. Zehr, J. Hsu, and M. A. Nedbal (2005)
Syst Biol
54, 317-337
| Abstract »
| Full Text »
| PDF »
- Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods.
- B. R. Holland, F. Delsuc, V. Moulton, and A. Baker (2005)
Syst Biol
54, 66-76
| Abstract »
| Full Text »
| PDF »
- Evolution of the AID/APOBEC Family of Polynucleotide (Deoxy)cytidine Deaminases.
- S. G. Conticello, C. J. F. Thomas, S. K. Petersen-Mahrt, and M. S. Neuberger (2005)
Mol. Biol. Evol.
22, 367-377
| Abstract »
| Full Text »
| PDF »
- A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods.
- A. Gibson, V. Gowri-Shankar, P. G. Higgs, and M. Rattray (2005)
Mol. Biol. Evol.
22, 251-264
| Abstract »
| Full Text »
| PDF »
- A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record.
- E. C. Teeling, M. S. Springer, O. Madsen, P. Bates, S. J. O'Brien, and W. J. Murphy (2005)
Science
307, 580-584
| Abstract »
| Full Text »
| PDF »
- Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages.
- G. Bourque, E. M. Zdobnov, P. Bork, P. A. Pevzner, and G. Tesler (2005)
Genome Res.
15, 98-110
| Abstract »
| Full Text »
| PDF »
- Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates.
- W. A. Kellner, R. T. Sullivan, B. H. Carlson, NISC Comparative Sequencing Program, and J. W. Thomas (2005)
Genome Res.
15, 166-173
| Abstract »
| Full Text »
| PDF »
- Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models.
- J. P. Huelsenbeck and B. Rannala (2004)
Syst Biol
53, 904-913
| Abstract »
| Full Text »
| PDF »
- Toward a better understanding of the infrageneric relationships in Cortinarius (Agaricales, Basidiomycota).
- U. Peintner, J.-M. Moncalvo, and R. Vilgalys (2004)
Mycologia
96, 1042-1058
| Abstract »
| Full Text »
| PDF »
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- G. A. Huttley (2004)
Mol. Biol. Evol.
21, 1760-1768
| Abstract »
| Full Text »
| PDF »
- A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data.
- M. Pagel and A. Meade (2004)
Syst Biol
53, 571-581
| Abstract »
| Full Text »
| PDF »
- Analysis of missense variation in human BRCA1 in the context of interspecific sequence variation.
- V Abkevich, A Zharkikh, A M Deffenbaugh, D Frank, Y Chen, D Shattuck, M H Skolnick, A Gutin, and S V Tavtigian (2004)
J. Med. Genet.
41, 492-507
| Abstract »
| Full Text »
| PDF »
- Testing the Phylogenetic Position of a Parasitic Plant (Cuscuta, Convolvulaceae, Asteridae): Bayesian Inference and the Parametric Bootstrap on Data Drawn from Three Genomes.
- S. Stefanovic and R. G. Olmstead (2004)
Syst Biol
53, 384-399
| Abstract »
| Full Text »
| PDF »
- QRX, a novel homeobox gene, modulates photoreceptor gene expression.
- Q.-l. Wang, S. Chen, N. Esumi, P. K. Swain, H. S. Haines, G. Peng, B. M. Melia, I. McIntosh, J. R. Heckenlively, S. G. Jacobson, et al. (2004)
Hum. Mol. Genet.
13, 1025-1040
| Abstract »
| Full Text »
| PDF »
- Calibration and Error in Placental Molecular Clocks: A Conservative Approach Using the Cetartiodactyl Fossil Record.
- M. van Tuinen and E. A. Hadly (2004)
J. Hered.
95, 200-208
| Abstract »
| Full Text »
| PDF »
- Regulation of Ion Channel Expression.
- B. Rosati and D. McKinnon (2004)
Circ. Res.
94, 874-883
| Abstract »
| Full Text »
| PDF »
- Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates.
- H. Brinkmann, B. Venkatesh, S. Brenner, and A. Meyer (2004)
PNAS
101, 4900-4905
| Abstract »
| Full Text »
| PDF »
- Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny.
- Y. J. Liu and B. D. Hall (2004)
PNAS
101, 4507-4512
| Abstract »
| Full Text »
| PDF »
- The scaling of frontal cortex in primates and carnivores.
- E. C. Bush and J. M. Allman (2004)
PNAS
101, 3962-3966
| Abstract »
| Full Text »
| PDF »
- Are Combined Analyses Better Than Single Gene Phylogenies? A Case Study Using SSU rDNA and rbcL Sequence Comparisons in the Zygnematophyceae (Streptophyta).
- A. A. Gontcharov, B. Marin, and M. Melkonian (2004)
Mol. Biol. Evol.
21, 612-624
| Abstract »
| Full Text »
| PDF »
- On Herrera and Jagadeeswaran's "Annual Fish as a Genetic Model for Aging".
- S. N. Austad (2004)
J. Gerontol. A Biol. Sci. Med. Sci.
59, B99-100
| Full Text »
| PDF »
- Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian Methods.
- A. Reyes, C. Gissi, F. Catzeflis, E. Nevo, G. Pesole, and C. Saccone (2004)
Mol. Biol. Evol.
21, 397-403
| Abstract »
| Full Text »
| PDF »
- Cryptosporidium Taxonomy: Recent Advances and Implications for Public Health.
- L. Xiao, R. Fayer, U. Ryan, and S. J. Upton (2004)
Clin. Microbiol. Rev.
17, 72-97
| Abstract »
| Full Text »
| PDF »
- Evolution of the Human ASPM Gene, a Major Determinant of Brain Size.
- J. Zhang (2003)
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165, 2063-2070
| Abstract »
| Full Text »
| PDF »
- Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs).
- E. T. Dermitzakis, A. Reymond, N. Scamuffa, C. Ucla, E. Kirkness, C. Rossier, and S. E. Antonarakis (2003)
Science
302, 1033-1035
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| PDF »
- Phylogenetic relationships of European Phlegmacium species (Cortinarius, Agaricales).
- S. Garnica, M. Weiss, B. Oertel, and F. Oberwinkler (2003)
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95, 1155-1170
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| Full Text »
| PDF »
- Unique Mammalian tRNA-Derived Repetitive Elements in Dermopterans: The t-SINE Family and Its Retrotransposition Through Multiple Sources.
- O. Piskurek, M. Nikaido, Boeadi, M. Baba, and N. Okada (2003)
Mol. Biol. Evol.
20, 1659-1668
| Abstract »
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- Using Evolutionary Rates to Investigate Protein Functional Divergence and Conservation: A Case Study of the Carbonic Anhydrases.
- B. Knudsen, M. M. Miyamoto, P. J. Laipis, and D. N. Silverman (2003)
Genetics
164, 1261-1269
| Abstract »
| Full Text »
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- The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals.
- W. J. Murphy, L. Fronicke, S. J. O'Brien, and R. Stanyon (2003)
Genome Res.
13, 1880-1888
| Abstract »
| Full Text »
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- Parallel Functional Changes in the Digestive RNases of Ruminants and Colobines by Divergent Amino Acid Substitutions.
- J. Zhang (2003)
Mol. Biol. Evol.
20, 1310-1317
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| Full Text »
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- Paleomolecular biology unravels the evolutionary mystery of vertebrate UV vision.
- J. Zhang (2003)
PNAS
100, 8045-8047
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- MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences.
- S. Schwartz, L. Elnitski, M. Li, M. Weirauch, C. Riemer, A. Smit, N. C. S. Program, E. D. Green, R. C. Hardison, and W. Miller (2003)
Nucleic Acids Res.
31, 3518-3524
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- Response to Comment on "Grasping Primate Origins".
- J. I. Bloch and D. M. Boyer (2003)
Science
300, 741c
| Full Text »
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- Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes.
- G. M. Cooper, M. Brudno, N. C. S. Program, E. D. Green, S. Batzoglou, and A. Sidow (2003)
Genome Res.
13, 813-820
| Abstract »
| Full Text »
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- Ancient SINEs from African Endemic Mammals.
- M. Nikaido, H. Nishihara, Y. Hukumoto, and N. Okada (2003)
Mol. Biol. Evol.
20, 522-527
| Abstract »
| Full Text »
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- Estimation of Divergence Times for Major Lineages of Primate Species.
- G. V. Glazko and M. Nei (2003)
Mol. Biol. Evol.
20, 424-434
| Abstract »
| Full Text »
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- Placental mammal diversification and the Cretaceous-Tertiary boundary.
- M. S. Springer, W. J. Murphy, E. Eizirik, and S. J. O'Brien (2003)
PNAS
100, 1056-1061
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- Reciprocal chromosome painting among human, aardvark, and elephant (superorder Afrotheria) reveals the likely eutherian ancestral karyotype.
- F. Yang, E. Z. Alkalaeva, P. L. Perelman, A. T. Pardini, W. R. Harrison, P. C. M. O'Brien, B. Fu, A. S. Graphodatsky, M. A. Ferguson-Smith, and T. J. Robinson (2003)
PNAS
100, 1062-1066
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